PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015665P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 310aa    MW: 32959.2 Da    PI: 9.3989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015665P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-06101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     C++Gd+C +aHg+
  MELO3C015665P1 101 KTRLCNKFNSAEGCRFGDKCYYAHGE 126
                     8***********************96 PP
2zf-CCCH26.31.3e-08276301127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +f + G C + +rC+FaHg+
  MELO3C015665P1 276 FKTKLCANFTK-GACTFRERCHFAHGE 301
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2113765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-73962IPR000571Zinc finger, CCCH-type
PfamPF146080.574562No hitNo description
Gene3DG3DSA:4.10.1000.102.3E-1297130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-798130IPR000571Zinc finger, CCCH-type
SMARTSM003560.06299126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9999127IPR000571Zinc finger, CCCH-type
PfamPF146080.05105125No hitNo description
SuperFamilySSF547915.41E-14163244IPR004088K Homology domain, type 1
SMARTSM003227.0E-11172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.1E-14172243IPR004088K Homology domain, type 1
PROSITE profilePS5008413.25173237IPR004088K Homology domain, type 1
CDDcd001053.68E-11175237No hitNo description
PfamPF000138.7E-9175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-14274307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68275302IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5275301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8275305IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5276301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDLDGARKRE RTETALNGNG GFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF  60
AHYVPGGVKS ISQMISPALP PGIRNPAPPQ SFPDGVPPAV KTRLCNKFNS AEGCRFGDKC  120
YYAHGEWELG RPNPPQDHGG MGPGPMQQPR MGGGWNAPPP PPNHGPAASF GASATAKISV  180
DASLAGPIIG KNGINSKNIC RMTGARLSIK EHESDPNLKN IELEGTFDQI NLASSMVREL  240
IANVGAASAN NAMKQHQHQH QHHSGMQQSS GSANNFKTKL CANFTKGACT FRERCHFAHG  300
ESELRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451117.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3BQ690.0A0A1S3BQ69_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008451117.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-41C3H family protein