PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015665P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 237aa    MW: 25191.4 Da    PI: 9.1585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015665P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-062853227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC+ f     C++Gd+C +aHg+
  MELO3C015665P2 28 KTRLCNKFNSAEGCRFGDKCYYAHGE 53
                    8***********************96 PP
2zf-CCCH26.89e-09203228127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +f + G C + +rC+FaHg+
  MELO3C015665P2 203 FKTKLCANFTK-GACTFRERCHFAHGE 228
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-122457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-82557IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.992654IPR000571Zinc finger, CCCH-type
SMARTSM003560.0622653IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.07E-1490171IPR004088K Homology domain, type 1
SMARTSM003227.0E-1199169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.0E-1499170IPR004088K Homology domain, type 1
PROSITE profilePS5008413.25100164IPR004088K Homology domain, type 1
CDDcd001051.24E-11102164No hitNo description
PfamPF000135.4E-9102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.109.1E-15201234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68202229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8202232IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5202228IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MISPALPPGI RNPAPPQSFP DGVPPAVKTR LCNKFNSAEG CRFGDKCYYA HGEWELGRPN  60
PPQDHGGMGP GPMQQPRMGG GWNAPPPPPN HGPAASFGAS ATAKISVDAS LAGPIIGKNG  120
INSKNICRMT GARLSIKEHE SDPNLKNIEL EGTFDQINLA SSMVRELIAN VGAASANNAM  180
KQHQHQHQHH SGMQQSSGSA NNFKTKLCAN FTKGACTFRE RCHFAHGESE LRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451117.11e-175PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ32e-71C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A1S3BQ691e-174A0A1S3BQ69_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008451117.11e-174(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-43C3H family protein