PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015667P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 358aa    MW: 41576.8 Da    PI: 8.7293
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015667P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.6e-115299255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGV    ++grW A+I+       + +r++lg+f t+++Aa a++ a+ kl+ 
  MELO3C015667P1 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKTEKDAAMAYDSAAIKLRT 99
                    789996.6679******999......44**********99************996 PP
2B394.38.5e-30176266184
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a +h        +++  +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ 
  MELO3C015667P1 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEVNGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 266
                     99****************************99966677899************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-1652108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-1852107IPR001471AP2/ERF domain
SMARTSM003804.4E-2152113IPR001471AP2/ERF domain
PROSITE profilePS5103217.89952107IPR001471AP2/ERF domain
PfamPF008475.4E-65299IPR001471AP2/ERF domain
CDDcd000181.10E-2352109No hitNo description
Gene3DG3DSA:2.40.330.102.6E-35171300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29174269IPR015300DNA-binding pseudobarrel domain
CDDcd100177.43E-27174265No hitNo description
PfamPF023628.2E-27176266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929176289IPR003340B3 DNA binding domain
SMARTSM010191.2E-21176275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEDEASSSLL SHIKNPILTE EVSDSNFTYY AIPEAKRPRL DNDLNDVIAV GKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KTEKDAAMAY DSAAIKLRTR DSHRNFPWTR RTIEEPNFQV  120
KFSTDAVLSM IKDGSYYSKF SAYLRTRSQI HDTNLQNPKK LDNGDGDSLF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE VNGDDIEIVF YDTSMKTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDENGGSLN FIDVIYKKSE DDQSESSCLA  300
AEKESVKNEK ILEREELRQN QEKDYEKMKK EILSFELNRN DKKVGEKRVR LFGVHIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3117527413108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451118.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P54e-99RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1S3BQV00.0A0A1S3BQV0_CUCME; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_008451118.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-101RAV family protein