PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C015910P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 241aa MW: 27431.7 Da PI: 6.7141

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015910P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105	3.9e-33	141	198	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts C+vkk+ver+ +dp++v++tYeg+H+h+ MELO3C015910P1 141 EDGYRWRKYGQKAVKNSPHPRSYYRCTSVACQVKKRVERCFQDPSIVVTTYEGQHTHP 198 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-35	126	200	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-29	132	200	IPR003657	WRKY domain
PROSITE profile	PS50811	31.341	135	200	IPR003657	WRKY domain
SMART	SM00774	2.8E-39	140	199	IPR003657	WRKY domain
Pfam	PF03106	5.8E-26	141	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEEVVAADSL RYPFLDGNES KSCLGFMELL EVDRDFSSQF DVFETSSPSL SSSLISNPEN 60 LEIWNQWPTT PNYSSSISST SSEIVNGELT EPNLEGGEEK QDRQPTVKTD KQLKTKKRSP 120 KKKGVEPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPHP RSYYRCTSVA CQVKKRVERC 180 FQDPSIVVTT YEGQHTHPSP IMARPTFFPP PISVTLYDDY LIQNSHNSNV MSHSIAWCHH 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-27	130	200	7	77	Probable WRKY transcription factor 4
2lex_A	7e-27	130	200	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984037	0.0	GU984037.1 Cucumis sativus WRKY protein (WRKY52) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451465.2	0.0	PREDICTED: probable WRKY transcription factor 23
Swissprot	O22900	2e-46	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S3BQY1	1e-180	A0A1S3BQY1_CUCME; probable WRKY transcription factor 23
STRING	XP_008451465.1	1e-180	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	3e-47	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]