PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015945P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 171aa    MW: 18530.2 Da    PI: 9.7195
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015945P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-195286135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C++C++t TplWR gp g+++LCnaCG++yrk+++
  MELO3C015945P1 52 CVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKM 86
                    ********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-144490No hitNo description
SMARTSM004014.8E-1146110IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5714682IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-155087IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.84E-145183No hitNo description
PfamPF003206.6E-175285IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MLKGEVIGDS LIMAFLMNRA ADHSPSTFNP SLMTAVSEQG LFELEAEKQR ACVHCRATRT  60
PLWRAGPAGP RSLCNACGIR YRKMKMNSNN DGEVNNNNNN NNNNNNKMGK GKKMGGGGSL  120
KLRVVRLGRE IMVHRRPTTA MEDNGVAESI GEEEQTAAML LMALSSGYVS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818031e-167LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132551e-167LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451515.11e-123PREDICTED: GATA transcription factor 15-like
TrEMBLA0A1S3BSR71e-122A0A1S3BSR7_CUCME; GATA transcription factor 15-like
STRINGXP_008451515.11e-122(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-21GATA transcription factor 15