PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016043P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 325aa    MW: 36621.1 Da    PI: 9.9637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016043P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-0680102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  MELO3C016043P1  80 FVCEICNKGFQRDQNLQLHRRGH 102
                     89*******************88 PP
2zf-C2H220.21.5e-06156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+Lk H++t+
  MELO3C016043P1 156 WKCEKCSKKYAVQSDLKAHQKTC 178
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.59E-979102No hitNo description
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PfamPF121714.7E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035589121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-6144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.59E-9151177No hitNo description
SMARTSM0035539156176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265156184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDQLEEVEQ NNNNNQHQLL NHFLYGSPNG DQTNSHGSSN SLDHHQQRSV KKKRNLPGTP  60
DPNAEVIALS PTTLMARNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTGAEVKKRV  120
YVCPEPTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD LKAHQKTCGT  180
REYKCDCGTL FSRRDSFITH RAFCNALTEE SNKLKQGILS SNNNNNNIEP ISIISTPKLP  240
HFGTSIMPEF NPYDQKTPFK SLPQELNNST PTTGAPGGLF MGGHYRNNNN SSSLSSLKLS  300
STTSSRFSCL YDSKNGCLQV RTKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35152226372Zinc finger protein JACKDAW
5b3h_F3e-35152226372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451665.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-104IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A1S3BT630.0A0A1S3BT63_CUCME; protein indeterminate-domain 2-like
STRINGXP_008451665.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.18e-94C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]