PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016213P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BES1

Protein Properties

Length: 669aa MW: 75113.5 Da PI: 6.2484

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016213P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	155.9	2.9e-48	59	194	1	134
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 gg+ +++++kE+E++k+RER+RRai+++i+aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+++ p ++++ ++ +s es+++ MELO3C016213P1 59 GGKAKREREKEKERTKLRERHRRAITSRILAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRQSTPPS--QSQGAAFPVRSGESPIS 151 57899***************************************************************999888..66677788888888888 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa...a 134 s k +++++ ++ + ++++ ++++sp+slds+ +++ + MELO3C016213P1 152 sGSFKGCSIKAALDCQPSVLRIDESLSPASLDSVVITERdakN 194 7789****************************999875442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	8.0E-49	60	204	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	8.44E-160	226	660	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	6.2E-171	229	660	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.9E-81	253	624	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	266	280	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	287	305	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	309	330	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	402	424	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	475	494	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	509	525	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	526	537	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	544	567	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-53	582	604	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MSGSLNDDSF HQDLQSQANH ASDYLSHQLQ PPPPPRRPRG FAATAAAMGP TTTTAATTGG 60 KAKREREKEK ERTKLRERHR RAITSRILAG LRQYGNFPLP ARADMNDVLA ALAREAGWVV 120 EADGTTYRQS TPPSQSQGAA FPVRSGESPI SSGSFKGCSI KAALDCQPSV LRIDESLSPA 180 SLDSVVITER DAKNEKYTAL SPLNAAHCLE DQLIQDIRCR ENESQFRGTP YVPVYVMLAT 240 GFINNFCQLI DPDGVRQELS HLQSLNVDGV IVDCWWGIVE AWNPQKYVWS GYRDLFNIIR 300 EFKLKVQVVM AFHASGGTES GDAFIKLPQW VLEIGKENPD IFFTDREGRR NKDCLSWGID 360 KERVLRGRTG IEVYFDFMRS FHTEFNDLFA EGLVSAIEVG LGASGELKYP SFSERMGWRY 420 PGIGEFQCYD KYLQQSLRKA AGLRGHSFWA RGPDNAGQYN SRPHETGFFC ERGDYDSYYG 480 RFFLQWYAQT LIYHVDNVLS LASLVFEETK FIVKIPAVYW WYKTSSHAAE LTSGFYNPSN 540 QDGYSPVFDV LKKHSVIVKL VCCGMPVAGQ DVDDALADPE SLSWQILNSA WDRGLTVAGE 600 NSLSCYDRDG YVRIIDMAKP RSDPDRRHFS FFAYRQPSAL IQGAVCFPEL DYFIKCMHGE 660 IEGDIVPS*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MSGSLNDDSF HQDLQSQANH ASDYLSHQLQ PPPPPRRPRG FAATAAAMGP TTTTAATTGG  60
KAKREREKEK ERTKLRERHR RAITSRILAG LRQYGNFPLP ARADMNDVLA ALAREAGWVV  120
EADGTTYRQS TPPSQSQGAA FPVRSGESPI SSGSFKGCSI KAALDCQPSV LRIDESLSPA  180
SLDSVVITER DAKNEKYTAL SPLNAAHCLE DQLIQDIRCR ENESQFRGTP YVPVYVMLAT  240
GFINNFCQLI DPDGVRQELS HLQSLNVDGV IVDCWWGIVE AWNPQKYVWS GYRDLFNIIR  300
EFKLKVQVVM AFHASGGTES GDAFIKLPQW VLEIGKENPD IFFTDREGRR NKDCLSWGID  360
KERVLRGRTG IEVYFDFMRS FHTEFNDLFA EGLVSAIEVG LGASGELKYP SFSERMGWRY  420
PGIGEFQCYD KYLQQSLRKA AGLRGHSFWA RGPDNAGQYN SRPHETGFFC ERGDYDSYYG  480
RFFLQWYAQT LIYHVDNVLS LASLVFEETK FIVKIPAVYW WYKTSSHAAE LTSGFYNPSN  540
QDGYSPVFDV LKKHSVIVKL VCCGMPVAGQ DVDDALADPE SLSWQILNSA WDRGLTVAGE  600
NSLSCYDRDG YVRIIDMAKP RSDPDRRHFS FFAYRQPSAL IQGAVCFPEL DYFIKCMHGE  660
IEGDIVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-123	231	660	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451866.1	0.0	PREDICTED: beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1S3BTA5	0.0	A0A1S3BTA5_CUCME; Beta-amylase
STRING	XP_008451866.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]