PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016370P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 187aa    MW: 20645.4 Da    PI: 6.5666
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016370P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC++C ++ H
  MELO3C016370P1  4 LCDACESAAAIVFCAADEAALCRSCDEKVH 33
                    7**************************998 PP
2zf-B_box25.62.5e-085292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  MELO3C016370P1 52 DVPCCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHK 92
                    5789**************************99966666787 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
CDDcd000211.94E-5345No hitNo description
PfamPF006436.9E-6342IPR000315B-box-type zinc finger
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9585196IPR000315B-box-type zinc finger
PfamPF006434.8E-65292IPR000315B-box-type zinc finger
CDDcd000216.60E-65693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPCCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HKRYLLLRQR VEFPGDKPIN LDDPSPQSKV  120
PNEIGKVHNQ PPPHKVTVED TQQNHHRLSP VREANDDGHA ETDTKMIDLN MKPHRVHGQA  180
ANNQDL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-136LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-136LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452057.11e-137PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM59e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S3BSD01e-135A0A1S3BSD0_CUCME; B-box zinc finger protein 18-like
STRINGXP_008452057.11e-136(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-77DBB family protein