PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016391P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 255aa    MW: 26728.2 Da    PI: 9.1185
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016391P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20134168135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  MELO3C016391P1 134 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 168
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89128164IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-19128180IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14131176No hitNo description
Gene3DG3DSA:3.30.50.103.9E-17132168IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.23E-13133165No hitNo description
PROSITE patternPS003440134159IPR000679Zinc finger, GATA-type
PfamPF003205.8E-18134168IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMHHYGGGGG GGGGGASSFS LFLSVPNHGA ADMYSSSTNY ASSSSSSSSS PSSVDCTLSL  60
GTPSTRSSEF DSDKRAAARN PHRRSAGSYV SNFCWDLLHP KHKTSGRGAG GAASNNNITA  120
AVSNSGDPLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AAATVNSSTA  180
ESNHHHHSMF NGSYTNSSTW VPQQLPATTQ KHPCLSAAIG NDDVGPENGI SFLSWRLNVA  240
NTDHRPTLVH DFTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452087.10.0PREDICTED: GATA transcription factor 18-like
TrEMBLA0A1S3BSF90.0A0A1S3BSF9_CUCME; GATA transcription factor 18-like
STRINGXP_008452087.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-38GATA family protein