PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016413P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 513aa    MW: 56446.2 Da    PI: 6.7055
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016413P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15232291155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  MELO3C016413P1 232 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 291
                     57*******************666664478446*************************98 PP
2AP250.26.6e-16334385155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  MELO3C016413P1 334 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 385
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18232301IPR016177DNA-binding domain
CDDcd000185.74E-23232301No hitNo description
PfamPF008476.9E-12232291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16233300IPR001471AP2/ERF domain
PROSITE profilePS5103219.44233299IPR001471AP2/ERF domain
SMARTSM003801.1E-29233305IPR001471AP2/ERF domain
PRINTSPR003673.4E-6234245IPR001471AP2/ERF domain
CDDcd000181.23E-11334393No hitNo description
SuperFamilySSF541717.19E-18334394IPR016177DNA-binding domain
PfamPF008472.8E-10334385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18335393IPR001471AP2/ERF domain
PROSITE profilePS5103219.177335393IPR001471AP2/ERF domain
SMARTSM003807.3E-31335399IPR001471AP2/ERF domain
PRINTSPR003673.4E-6375395IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAPATNWLSF SLSPIEMLRS SDSPFLPFDS SSSSPSPHYL LDNFYHGWSN NNAANSHSKS  60
SQLFFNNQEE EAAAAVKDDQ TTIFLHPQTQ AHHHHHHHQP KLEDFLGDSS PMVRYSDSQT  120
DTQDSSLTHI YDHASAPYFP HDQQDLKTIA AFQAFSANSG SEVDDSASIP TTHIPSAHSI  180
DSSLTNNDFP SFSTGALSLA VAQSSDTAPA PVVAVDSDSS KKIADTFGQR TSIYRGVTRH  240
RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV  300
SNYAKELEEM KLVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  360
LYLGTFATEE EAAEAYDIAA IKFRGLNAVT NFEMNRYDVE AIAKSALPIG GAAKRLKLCL  420
ESDQKPIPNH DQAIQCSSGS NNINFGTAMQ AVPPIPCGIP YDTAAVLYHH NYFHHLQPNA  480
IGSSESTSPG IAVPGTMGPQ ATEFFVWPHQ SY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452164.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3BU040.0A0A1S3BU04_CUCME; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_008452164.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-171AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]