PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016458P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 172aa MW: 19836.9 Da PI: 10.9231

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016458P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.7	3e-25	58	105	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + le+++kyF+ pi +AAke++++lTvLKr+CRq++I+RWPhRk ksl MELO3C016458P1 58 LGLEEIRKYFHIPISEAAKEINIGLTVLKRRCRQLNIMRWPHRKHKSL 105 6799****************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.837	45	127	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-22	58	105	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MPHLMPPMLT PVASSTKSDS YCYRDANSSH AATSDAAQDF FSKGNNSGNK RRKGSFVLGL 60 EEIRKYFHIP ISEAAKEINI GLTVLKRRCR QLNIMRWPHR KHKSLNSLIQ NVKEMRLTNE 120 VKGLEEHKRL LEEMPNMDLT HTIKRLRQAC FKANYKKNRR LRSNNIASLH H*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681858	1e-123	LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBank	LN713260	1e-123	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466842.1	9e-85	PREDICTED: protein RKD4
Swissprot	Q9LVU8	8e-38	RKD4_ARATH; Protein RKD4
TrEMBL	A0A1S3CS47	2e-83	A0A1S3CS47_CUCME; protein RKD4
TrEMBL	E5GBA6	2e-83	E5GBA6_CUCME; Transcription factor
STRING	XP_008466842.1	3e-84	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-40	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]