PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016469P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 296aa    MW: 34197.4 Da    PI: 4.822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016469P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07229248625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G rC+++H
  MELO3C016469P1 229 CPFHLKTGACRFGQRCSRIH 248
                     *******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.042223251IPR000571Zinc finger, CCCH-type
PRINTSPR018484.7E-13229248IPR009145U2 auxiliary factor small subunit
PfamPF006423.8E-5229248IPR000571Zinc finger, CCCH-type
PRINTSPR018484.7E-13248268IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEEPKLGGGG GGGEEEEEEE EVKPCSVDNL CRKEKRKALK KIKRKQLRKE LALKRLQEEE  60
ARLNDPEEQR RVQLMELEEE ERSERERKLF EERERAWMEA MELKKKKMAE EEEEEQQRRA  120
LEEESTPRQA ENENEFNEED GWEYIEGPAE IIWKGEEIIL KKKLIKVPKK GVEPEKSLED  180
AHRPTSNPLP PQSEAFTDYK NTPISTRQVI EDVASQVPNF GTEQDKSHCP FHLKTGACRF  240
GQRCSRIHFY PDKSCTLLIK NMYNGPGLAW EQDEGLEGLT ARIVSNCHGG LQSCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452219.11e-147PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ9SY743e-85C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A1S3BUH01e-145A0A1S3BUH0_CUCME; zinc finger CCCH domain-containing protein 5
STRINGXP_008452219.11e-146(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-49C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]