PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016581P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 436aa MW: 46845.5 Da PI: 9.7665

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016581P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	201	223	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H MELO3C016581P1 201 TCHKCGEQFNKWDAAEAHHLSkH 223 7*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	202	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.34E-22	225	434	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.3E-9	229	411	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPTVWLSLKK SLHCKSEPSE VHDPKSKKNL GAILTRKTGG GGRSGCSRSI ANLKDVINGG 60 SRRHLDKPPS CSPRSIGSSE FLNPITHEVI LSNSKCELKI TGFHGGFPQD LPPADTHGGA 120 STFVGTLTPG TPGPGGHPSM HYFNPSLRSS SKKFTFREGF GSSNKSGGGA GGGARGSGVH 180 LSNRISLETE NSRNGCSSAV TCHKCGEQFN KWDAAEAHHL SKHAVTELVE GDSSRKIVEI 240 ICRTSWLKSE NQSGRIERVL KVHNMQRTLA RFEEYRETVK IKASKLPKKH PRCLADGNEL 300 LRFYGTTVAC LLGLNGSSSL CISEKCCVCR IIRNGFSAKT EMEEGIGVFT TSTSARAFSS 360 IKGSGGDEGM TRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL HSNIEELYLL 420 NPRALLPCFV VICKP*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPTVWLSLKK SLHCKSEPSE VHDPKSKKNL GAILTRKTGG GGRSGCSRSI ANLKDVINGG  60
SRRHLDKPPS CSPRSIGSSE FLNPITHEVI LSNSKCELKI TGFHGGFPQD LPPADTHGGA  120
STFVGTLTPG TPGPGGHPSM HYFNPSLRSS SKKFTFREGF GSSNKSGGGA GGGARGSGVH  180
LSNRISLETE NSRNGCSSAV TCHKCGEQFN KWDAAEAHHL SKHAVTELVE GDSSRKIVEI  240
ICRTSWLKSE NQSGRIERVL KVHNMQRTLA RFEEYRETVK IKASKLPKKH PRCLADGNEL  300
LRFYGTTVAC LLGLNGSSSL CISEKCCVCR IIRNGFSAKT EMEEGIGVFT TSTSARAFSS  360
IKGSGGDEGM TRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL HSNIEELYLL  420
NPRALLPCFV VICKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681858	0.0	LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452316.1	0.0	PREDICTED: uncharacterized protein LOC103493380
TrEMBL	A0A1S3BUD2	0.0	A0A1S3BUD2_CUCME; uncharacterized protein LOC103493380
STRING	XP_008452316.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4983	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-151	C2H2 family protein