PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016976P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 211aa    MW: 23214.4 Da    PI: 6.8871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016976P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000264971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  MELO3C016976P1 49 FSCNYCQRKFFSSQALGGHQNAH 71
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-64676No hitNo description
PROSITE profilePS5015711.3444976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MESHTDGNPF SGEGEEDDEK EFSEERSSLL ELQLSSNNSS DSTNKPRIFS CNYCQRKFFS  60
SQALGGHQNA HKRERTLAKR VQKFDWAAAI PLHGGAFDRR SSLGLHAHSQ QIQKPPAVGL  120
FFGGAGPSSG SQLWPRPMFM GQQPAVGRLM AELGGRNFGR YDDVAEWTAI GTSNAGNESR  180
NNNNNNSNIV HSQTQQDKDQ TNFLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453080.11e-156PREDICTED: zinc finger protein 1-like
TrEMBLA0A1S3BVD71e-155A0A1S3BVD7_CUCME; zinc finger protein 1-like
STRINGXP_008453080.11e-155(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2483333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-27zinc-finger protein 1