PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017032P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 254aa MW: 28575.9 Da PI: 5.8968

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017032P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.6e-21	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ MELO3C017032P1 80 RQRWTPTPVQLQILEQIFDEgNGTPSKQKIKDITLQLtqhgQISEANVYNWFQNRRARSKR 140 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.5e-33	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it +L+++G+i+++NV++WFQNr+aR+++kq MELO3C017032P1 79 ARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-17	76	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.495	76	141	IPR001356	Homeobox domain
SMART	SM00389	4.6E-12	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-17	79	142	IPR009057	Homeodomain-like
CDD	cd00086	2.05E-13	80	142	No hit	No description
Pfam	PF00046	7.7E-19	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MQVEQLSNAD GVGGLYVKVM TDEQMELLRQ QISVYASICE QLVEMHKAIT AQQDLAGMRL 60 GNLYCDPIMA SAAGHKITAR QRWTPTPVQL QILEQIFDEG NGTPSKQKIK DITLQLTQHG 120 QISEANVYNW FQNRRARSKR KQANSLPNNA DSEPETEVDS PKEKKTKPET FQTYEHLVPQ 180 SGNMYSQRTD LSTEILSFDA QSNKGESMFQ SFGSGHISQM TPIQNHRNNM SNDKTNVPDY 240 SAYTPCEGYH LVE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452975.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	3e-78	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S3BUJ7	0.0	A0A1S3BUJ7_CUCME; WUSCHEL-related homeobox 8-like
STRING	XP_008452975.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-73	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]