PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017174P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 215aa MW: 24803.2 Da PI: 8.8802

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017174P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.4	4.3e-26	34	84	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++s+yF++pi+ AAkeL+v+lT+LK++CR++GI+RWPhRk+ s+ MELO3C017174P1 34 SKMLSKKVISEYFYMPITRAAKELNVGLTLLKKRCRELGIRRWPHRKLMSI 84 57899*******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.495	17	106	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-21	37	84	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVVHNKKGKK RSKCLKSENV CSNNSNNGSC YSSSKMLSKK VISEYFYMPI TRAAKELNVG 60 LTLLKKRCRE LGIRRWPHRK LMSIQTLIKN VKEIEKGDEE EGNGSENCKL KNVLEILENE 120 KKLMEERPDL QLEDNTKRLR QACFKANYKK RKLSGLIINN NSNNNNNIDD INSQNYFSSS 180 TTTIDNQDDH DDYDEEMKYL LSDCSFSSTN CMFM*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453676.1	1e-152	PREDICTED: protein RKD1-like
Swissprot	Q9M9U9	1e-52	RKD1_ARATH; Protein RKD1
TrEMBL	A0A1S3BWU6	1e-151	A0A1S3BWU6_CUCME; protein RKD1-like
STRING	XP_008453676.1	1e-152	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-53	RWP-RK domain-containing protein