PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017210P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 484aa    MW: 54070.4 Da    PI: 7.8648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017210P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004391413123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k+F +   L  H r+H
  MELO3C017210P1 391 HKCPICEKVFASGQALGGHKRSH 413
                     79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.16931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.38E-8931No hitNo description
PROSITE profilePS501579.785936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-888115No hitNo description
SMARTSM003550.08993115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45293120IPR007087Zinc finger, C2H2
PfamPF139125.0E-695117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM003550.084309331IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93309336IPR007087Zinc finger, C2H2
PfamPF139128.0E-11309333IPR007087Zinc finger, C2H2
SuperFamilySSF576679.31E-8309331No hitNo description
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
SuperFamilySSF576679.31E-8386413No hitNo description
SMARTSM003550.013391413IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-11391413IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681391413IPR007087Zinc finger, C2H2
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEANLVSRHV CKLCNKSFAC GRSLGGHMRS HLTNNLAEND EKHSRTSLQL GNYSGGSLSN  60
MEEEIDFGYG LRKNPKKTQK LEFLSEESSL QDKFCRECGK GFQSWKALFG HMKCHSERGV  120
VFSSSQEEVE EPDSHITDAK QKMVMDIQSD NENEVPNNKR KRSRRRRTSN QMGTANSTTS  180
FSFATNSSSV SDIEQEQEVA ISLMLLSMDM GNWVGFNSPA ESSDNNSKFL EAPSVVESKT  240
SVSNGCEAGS TMIKKSQLNQ RAGSKSSLKK NEQNQGRFSS DMFFKSPKKT LAEFWDSKIC  300
KKPKKRSKFE CDICNKIFDS YQALGGHRAS HKKLKGCFIE SAMEDEEEEE DEEEIGSESS  360
GEMTISANPK AESKGSKGIN NGGRIEKNSK HKCPICEKVF ASGQALGGHK RSHLMNGSET  420
KNRETIQIQK QVPEIRRFLD LNLPPEPVER ESKDHNLASL NPSWWVAANE HKHEALVNVG  480
FHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453249.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3BWK00.0A0A1S3BWK0_CUCME; zinc finger protein ZAT1-like
STRINGXP_008453249.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-29C2H2-like zinc finger protein