PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017222P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 588aa    MW: 67405.2 Da    PI: 5.2611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017222P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014558576220
                     EETTTTEEESSHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                     +C+ Cg+ F ++  L++H+
  MELO3C017222P1 558 SCETCGEEFDSRNKLHKHL 576
                     6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.22E-23489IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.8E-23475IPR001623DnaJ domain
SMARTSM002712.8E-22668IPR001623DnaJ domain
CDDcd062573.04E-17765IPR001623DnaJ domain
PROSITE profilePS5007619.079776IPR001623DnaJ domain
PfamPF002264.1E-21873IPR001623DnaJ domain
PRINTSPR006255.7E-14927IPR001623DnaJ domain
PRINTSPR006255.7E-142742IPR001623DnaJ domain
PRINTSPR006255.7E-144868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.21E-13287341No hitNo description
SMARTSM004512.9E-6292326IPR003604Zinc finger, U1-type
SMARTSM003550.7295319IPR015880Zinc finger, C2H2-like
PfamPF121711.9E-10295320IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328557586IPR007087Zinc finger, C2H2
SMARTSM003557557581IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559581IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MASAKRCHYE VLGLHIDCTA DEIRSAYRKL ALQRHPDKLV QSGLSQADAT AQFQELQHAY  60
EVLSDPKERA WYDSHRSQIL FSDAGSVNSS SAVPNLFPFF SNTVYSGYSD SGRGFYKIYS  120
DLFDKIYGNE INFAKKLGLR LDMVREAPVM GNLDSPYTQV TAFYNYWLGF CTVMDFCWAD  180
QYDVMAGPNR KSRRLMEEDN KKLRKKAKRE YNETVRGLAE FVKKRDKRVI DMAMKRNMEM  240
EKKKEEERER KKKRLEREKM EKLRTYEEPD WAKVEEVEED EEDVFEEENR RGKELYCVLC  300
GKKFKSEKQW KNHEQSKKHK EKVAEFKESL DDEDESEEFV DQGEGEEETT LQDDEVDKLG  360
EEFKESFDIE EEETESGGGL SGSEYNDVHE VDRSDMVGEA LGSNDDEERD ILEAMATGLR  420
NRKNAASVNQ PEASPVKTHF ENENDEPNPA EFENGKRGKK SRRAKKKGKG NDEAMNETDS  480
RNYKTNGDDS SHQQDSTSNS LHNDETSDKG ASELAKEQRA SSKSADRKAV TQNDMKINSR  540
HSSKGKKSKA TSKDSGNSCE TCGEEFDSRN KLHKHLGATG HASLKYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453267.20.0PREDICTED: LOW QUALITY PROTEIN: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-180JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A1S3BWZ10.0A0A1S3BWZ1_CUCME; LOW QUALITY PROTEIN: DNAJ protein JJJ1 homolog
STRINGXP_008453267.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-150DNAJ heat shock N-terminal domain-containing protein