PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017305P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 246aa MW: 26763.8 Da PI: 8.4332

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017305P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.2	1.3e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q MELO3C017305P1 4 SCNGCRVLRKGCSESCSIRPCLqwiksPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 98 6******************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ MELO3C017305P1 99 AVEAVLKGA 107 9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.973	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PQSQANATFF LAKFYGRAGL VNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IFGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSETAASH 120 MGPPLKGCDI RHVSKQQGSA SASAVRKIKT RRRFKRSGTA NKLKPKEEPG VVAVPEFIFD 180 DQTRIVSEPR CLKFELDNWK GGEWPEKECG SDDTECLSVE TVEGCQGGDV ELELTLGFGQ 240 SRMLT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453391.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	5e-82	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S3BXA9	1e-180	A0A1S3BXA9_CUCME; LOB domain-containing protein 41-like
STRING	XP_008453391.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-84	LOB domain-containing protein 41