PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017355P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 173aa    MW: 20025.5 Da    PI: 10.5992
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017355P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.3e-2292151357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  MELO3C017355P1  92 SRWNPTVEQLRILEELYRRgTRTPSADQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 151
                     8*****************99**************************************97 PP
2Wus_type_Homeobox118.33.3e-3890153265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+Pt eQ++iLeely++G+rtP++++iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
     MELO3C017355P1  90 SSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 153
                        579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.4E-589156IPR001356Homeobox domain
SuperFamilySSF466892.22E-1291156IPR009057Homeodomain-like
PfamPF000461.2E-1992151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-992151IPR009057Homeodomain-like
CDDcd000861.00E-593153No hitNo description
PROSITE profilePS5007110.73897152IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MWTLGYDDNG GEFCFSEAAF FHAARKLRPL LPRPLLSLRA NGPPNFSSQY HHIGNVLDEE  60
RKREYLLNNE KSSSSSSTSS TTPTIPIVVS SSRWNPTVEQ LRILEELYRR GTRTPSADQI  120
QHITAQLRRF GKIEGKNVFY WFQNHKARER QKRRRQTAAD QTKYSGKNIF MY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453687.11e-120PREDICTED: WUSCHEL-related homeobox 1
SwissprotQ6X7K03e-47WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A1S3BY161e-119A0A1S3BY16_CUCME; WUSCHEL-related homeobox 1
STRINGXP_008453687.11e-120(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-38WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]