PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017457P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 477aa    MW: 52453 Da    PI: 9.0732
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017457P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.3e-13141201155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g   k  + + lg ++ +e+Aa+a++ a++k++g
  MELO3C017457P1 141 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQVYFLGGYDKEEKAARAYDLAALKYWG 201
                     57*******************666664477533678889********************98 PP
2AP247.44.8e-15244295155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MELO3C017457P1 244 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 295
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-9141201IPR001471AP2/ERF domain
CDDcd000181.28E-20141211No hitNo description
SuperFamilySSF541719.81E-16141211IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-14142210IPR001471AP2/ERF domain
PROSITE profilePS5103217.741142209IPR001471AP2/ERF domain
SMARTSM003805.5E-27142215IPR001471AP2/ERF domain
PRINTSPR003672.3E-6143154IPR001471AP2/ERF domain
CDDcd000183.44E-25244305No hitNo description
PfamPF008476.0E-10244295IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18244305IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-18245303IPR001471AP2/ERF domain
PROSITE profilePS5103219.045245303IPR001471AP2/ERF domain
SMARTSM003807.9E-34245309IPR001471AP2/ERF domain
PRINTSPR003672.3E-6285305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MNNSSSSSSS SSSSPSPSSN WLAFSLSNNP DSLSLFHPNP NPNPIPIPTD LSIFSPTVPK  60
LEHFLRPPPP SHFSPHHSQI CDSDLKTIAA SFLRGPPTSH FPDQHFQHLH APLPPPPPTQ  120
PDTPPPPPPK KAVDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQVYFLG  180
GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYEKELEDM KNMTRQEFVA SLRRRSSGFS  240
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT  300
NFDISRYDVK SIASSNLPIG GMSGSKSKTT SDSAASDGGS RSTDERDVHH SPPSSSTSTF  360
ISSSSQQNNN SSSTLSFTMP IKQDPSDQYW SILSYNPEVY NANLPKPGDN NVPPLSSSSS  420
MFQQPESTMF PAITELGSSG SGMTEGGMYV QQQQQYVTPM AFAKASFFQT PIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453601.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-142AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1S3BW320.0A0A1S3BW32_CUCME; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008453601.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-116AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]