PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017545P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 406aa    MW: 43206.2 Da    PI: 9.1228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017545P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-055779123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  MELO3C017545P1 57 FVCEICNKGFQRDQNLQLHRRGH 79
                    89*******************88 PP
2zf-C2H211.80.00074133155123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  ks+ k H + +
  MELO3C017545P1 133 WKCEKCSKKYAVKSDWKAHSKIC 155
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-65679No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.2E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.85E-6128153No hitNo description
SMARTSM00355120133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLTDLENSTE VSISSSGNQL PPPKSAVKKK RSLPGMPDPD AEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEVKKKVYVC PEPSCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK KYAVKSDWKA HSKICGTREY KCDCETVFSR RDSFITHRAF  180
CDVLTKEVAG SLSPAAAEIP NLESDPQVQR PSGSSSPPPS APPLPAGTAP VPLALPPSTD  240
TISSIASIEN KASPENPPPP LGEAQDRTSL TGNSGSSNTT ISSTNATVLA SLFASSAASL  300
SLQPPQPPAF CDLLRAMARP DRATEIAPPL VFEPLSLCLS TDTDSSLFRA GIQDCRPYVP  360
PTPPAMSATG LLQKAAQMGA AAAGASVFRG LGLSSSPSSA QQGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33129189363Zinc finger protein JACKDAW
5b3h_F9e-33129189363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453721.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-141IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A1S3BXQ70.0A0A1S3BXQ7_CUCME; protein indeterminate-domain 1-like
STRINGXP_008453721.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]