PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017645P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 201aa    MW: 22243.1 Da    PI: 8.2364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017645P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17107157255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp+      r++lg++++  +Aaka++ a+ +l+g
  MELO3C017645P1 107 HFRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTYDSDIDAAKAYDCAAFRLRG 157
                     69*******.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-30106166IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21107167IPR016177DNA-binding domain
PROSITE profilePS5103223.815107165IPR001471AP2/ERF domain
PfamPF008472.1E-12107157IPR001471AP2/ERF domain
SMARTSM003803.0E-33107171IPR001471AP2/ERF domain
PRINTSPR003671.2E-12108119IPR001471AP2/ERF domain
CDDcd000186.16E-21115165No hitNo description
PRINTSPR003671.2E-12147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDSSDEFLTI EFITQFLLGD FSDHQTHFPT DSPFLHPIKL EDFFFDSPIP PLPPPPEISD  60
NDTKKPGKVV DQSTTPDPDM STQACGAELA AKVSVVEASG GKAGRRHFRG VRRRPWGKFA  120
AEIRDPTRKG SRVWLGTYDS DIDAAKAYDC AAFRLRGRKA ILNFPLEAGE PDPPTAADRK  180
RGRGQKWRNI SKALMATNEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26106166464ATERF1
3gcc_A4e-26106166464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453871.11e-146PREDICTED: ethylene-responsive transcription factor ERF106
TrEMBLA0A1S3BX961e-144A0A1S3BX96_CUCME; ethylene-responsive transcription factor ERF106
STRINGXP_008453871.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-33ERF family protein