PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017761P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 151aa    MW: 16723.3 Da    PI: 7.967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017761P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86e-0638771054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ +++  L++l+ +      +K + a++L +A+eYI+ L
  MELO3C017761P1 38 KERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 77
                    77999999**********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-102787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6932877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-123091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-63882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEVETMMEQK RSLCSVDESA LTSLTPKRHK TDFSISSKER KDKLGERIMA LQQLVSPYGK  60
TDTASVLLEA MEYIQFLHEQ VKVLSAPYLQ STPTVLLQEV EPCSHSLRSR GLCLVPISCT  120
AGVARSNGAD IWAPVKTISP KFEKHISPFN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818743e-84LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132613e-84LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454045.11e-108PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU23e-63BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1S3BYX61e-107A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2
STRINGXP_008454043.11e-107(Cucumis melo)
STRINGXP_004152130.11e-107(Cucumis sativus)
STRINGXP_004156961.11e-107(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]