PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017761P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 168aa    MW: 18444.3 Da    PI: 7.8811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017761P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-0655941054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ +++  L++l+ +      +K + a++L +A+eYI+ L
  MELO3C017761P2 55 KERKDKLGERIMALQQLVSPY-----GKTDTASVLLEAMEYIQFL 94
                    77999999**********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-1044103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6934594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1247108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-453100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-65599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIASSLCNAS AKFPAEVMEV ETMMEQKRSL CSVDESALTS LTPKRHKTDF SISSKERKDK  60
LGERIMALQQ LVSPYGKTDT ASVLLEAMEY IQFLHEQVKV LSAPYLQSTP TVLLQEVEPC  120
SHSLRSRGLC LVPISCTAGV ARSNGADIWA PVKTISPKFE KHISPFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818744e-84LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132614e-84LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454045.11e-121PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU23e-63BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1S3BYX61e-120A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2
STRINGXP_004152130.11e-120(Cucumis sativus)
STRINGXP_004156961.11e-120(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]