PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018030P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25588.4 Da    PI: 10.0312
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018030P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.2e-221761549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  MELO3C018030P1 17 NESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
                    89************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-30564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.549565IPR002100Transcription factor, MADS-box
CDDcd002652.42E-33673No hitNo description
SuperFamilySSF554551.44E-25678IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-18727IPR002100Transcription factor, MADS-box
PfamPF003193.7E-241661IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-182742IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRKSRGRQKV EMVKMPNESN LQVTFSKRRS GLFKKASELC TLCGAEIAII VFSPGKKVFS  60
FGHPCVEALI ERFVTRNPPP SSGTLQLIEA HRNANVRELN AQLTQVLNQL EMERKRGEEL  120
NKLRKASQAQ CWWELPIEEM EMHQLEQLKA SLDELKKNVT QQADRILIQT SSNANPPTQL  180
IFPTQIPTPT TTNGPNQQPG LFVVDPKNII SHLPFNYGSY GSRGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-16684179Myocyte-specific enhancer factor 2A
3kov_B7e-16684179Myocyte-specific enhancer factor 2A
3kov_I7e-16684179Myocyte-specific enhancer factor 2A
3kov_J7e-16684179Myocyte-specific enhancer factor 2A
3p57_A7e-16684179Myocyte-specific enhancer factor 2A
3p57_B7e-16684179Myocyte-specific enhancer factor 2A
3p57_C7e-16684179Myocyte-specific enhancer factor 2A
3p57_D7e-16684179Myocyte-specific enhancer factor 2A
3p57_I7e-16684179Myocyte-specific enhancer factor 2A
3p57_J7e-16684179Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454428.11e-168PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK24e-68AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S3BYP61e-167A0A1S3BYP6_CUCME; agamous-like MADS-box protein AGL62
STRINGXP_008454428.11e-167(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-70AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]