PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018070P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 197aa    MW: 22476.7 Da    PI: 8.1261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018070P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000224466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C++ F++   L  H+++H
  MELO3C018070P1 44 YGCNFCKREFKSAQALGGHMNVH 66
                    67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-64171No hitNo description
Gene3DG3DSA:3.30.160.607.3E-44269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8244471IPR007087Zinc finger, C2H2
PfamPF139125.0E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDNGAYMSNN TNNGKQQQQQ QQQRGYVKEG TFSSNEFQWP AKNYGCNFCK REFKSAQALG  60
GHMNVHRRDR ARMRLLPSWV SDNNYNNNYY SCPNPNFPNF SPSCFNFRSS SNKNSLCSSL  120
QDQDKKEIGS CSWNNNYKPS SLFVPHDDQE HVGDDSDQVL HVFKKKKKSL VNLELKMGSL  180
GDASSNNEDL DLELHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454679.11e-144PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3C0E41e-143A0A1S3C0E4_CUCME; transcriptional regulator SUPERMAN-like
STRINGXP_008454679.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-21zinc finger protein 11