PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018144P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 595aa    MW: 65846.1 Da    PI: 5.9073
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018144P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.9e-1292245931373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s++ ++  ++l+a+ +  +s  g+p+qRl ay++e+L ar  +s+ ++y+al+++e +   s++ l+++++++e++P+lkf++
  MELO3C018144P1 224 LKDLLIACAKALSENRMKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA---SDDLLSYMHMLYEICPYLKFGY 315
                     5789*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +++rLa++  + g+p+ef+  +     d
  MELO3C018144P1 316 MAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEVVEKRLAEISMKYGIPVEFHG-MPVFAPD 409
                     *******************************************************999999**************************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++F++rfle+l+yy a+f+s++++lpr+s++ri
  MELO3C018144P1 410 ITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFLETLDYYLAIFESIDVTLPRNSKKRI 504
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+++ivnv+aceg++r+erhe ++kW++rl++aGF++ pls+++++ +++ll+ ++ d y++ e++g+++lgWk+r+L+s+SaW
  MELO3C018144P1 505 NVEQHCLAKDIVNVIACEGRDREERHELFGKWKSRLTMAGFRQSPLSSYVNSVIRSLLKYYS-DHYTLVEKDGAMLLGWKNRNLISASAW 593
                     **********************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.122198575IPR005202Transcription factor GRAS
PfamPF035141.3E-126224593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDSHQLFGFG VNSAAGLSFT SPCSSVPSLP NTLLGPLKFN LSSSPALSPL FSSHFEFDSF  60
TTTTVSGSPD QRNSPDNLSG LSPSCNSSFE TSSFNQIASS YLDHFEDESR QLHSGSNAFV  120
YDGYSAENIS YTLKQLESVL MGPDNEEVVS KPDVSFGVSG RPQMMGQRSY SWSQDRRGGS  180
YGVQSQASPV SRSQQSEAVH LGKRQKSMDE SLLQQQGGLP SDNLKDLLIA CAKALSENRM  240
KDFDNLVATA RGAVSIGGEP IQRLGAYMVE GLVARKEESG ANIYRALNCR EPASDDLLSY  300
MHMLYEICPY LKFGYMAANG AIAEACRNED RIHIIDFQIT QGTQWLTLLQ ALAARPSGAP  360
HVRITGIDDP VSKYARGDGL EVVEKRLAEI SMKYGIPVEF HGMPVFAPDI TRDMLDIRPG  420
EALAVNFPLQ LHHTPDESVD VNNPRDGLLR MVKSLSPKVV TLVEQESNTN TTPFFNRFLE  480
TLDYYLAIFE SIDVTLPRNS KKRINVEQHC LAKDIVNVIA CEGRDREERH ELFGKWKSRL  540
TMAGFRQSPL SSYVNSVIRS LLKYYSDHYT LVEKDGAMLL GWKNRNLISA SAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-612285938374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454576.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3BYH50.0A0A1S3BYH5_CUCME; scarecrow-like protein 21
STRINGXP_008454576.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-162GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]