PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018242P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 257aa MW: 28368.8 Da PI: 9.4929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018242P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.7	2.1e-31	3	76	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g++vg+kk Lvfy g+apkg+kt+W+mheyrl MELO3C018242P1 3 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-QGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 76 579******************************999988.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.156	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-41	2	100	IPR003441	NAC domain
Pfam	PF02365	8.5E-15	7	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFGEKEWYFF SPRDRKYPNG SRPNRVAGSG YWKATGTDKI ISTQGKKVGI KKALVFYVGK 60 APKGTKTNWI MHEYRLIDTS RKTGSTKLDD WVLCRIYKKN SSAQKLPPMT SSISSMECSN 120 GGSSSTCSSS HLDDVLESLP EIKDGLFSLP RVNSLLTLQQ DHENLKFQNH LMGSTNFDWA 180 SAAAGTSFEG YNSVAELAPL TQSQAPSGLI SSDMYIPACQ PPRSTAEQEV QSGFQRFHNF 240 GWLQKNFSNS GNGFGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-67	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-67	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-67	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-67	1	105	67	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-67	1	105	70	174	NAC domain-containing protein 19
3swm_B	4e-67	1	105	70	174	NAC domain-containing protein 19
3swm_C	4e-67	1	105	70	174	NAC domain-containing protein 19
3swm_D	4e-67	1	105	70	174	NAC domain-containing protein 19
3swp_A	4e-67	1	105	70	174	NAC domain-containing protein 19
3swp_B	4e-67	1	105	70	174	NAC domain-containing protein 19
3swp_C	4e-67	1	105	70	174	NAC domain-containing protein 19
3swp_D	4e-67	1	105	70	174	NAC domain-containing protein 19
4dul_A	4e-67	1	105	67	171	NAC domain-containing protein 19
4dul_B	4e-67	1	105	67	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681826	0.0	LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008454666.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	3e-80	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A1S3C0D5	0.0	A0A1S3C0D5_CUCME; NAC domain-containing protein 72-like
STRING	XP_008454666.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-80	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]