PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018249P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 575aa    MW: 64597 Da    PI: 9.4434
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018249P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.6e-1723108899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l s rl +p kf+++ +++   ++ ++l  +sg++W v+l   +  +  ++ +GW  F++++ L+ gDf+vF++d+  e +++v+vf++
  MELO3C018249P1  23 SSTLCSERLKVPLKFVKHLEEI--IGRSVVLIGPSGQTWLVNL--IQENDNLFFCEGWPTFARDHALECGDFLVFRYDS--ELNFNVRVFDQ 108
                     7788899*********666766..6678***************..56666688888********************976..55569*99997 PP
2B347.72.8e-152323131498
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       l +p kf  +h   + ++ +l+l +++g+sW+v+    ++   +++l +GW  Fv+ n+++ gD++vF+l+++ e   +v++fr
  MELO3C018249P1 232 YTLNIPYKFSMAHL--PSCKLKLVLHNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRGNDINMGDICVFELVRDCEL--RVHIFR 313
                     5689*****98885..458889**************954566666799************************996655..999998 PP
3B348.12.1e-15455543596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++ +++ s  l +p +f ++h  +  + ++++l+ ++g  W v+    + ++ ++++ +GW +Fv++ng++ gD+++F+l+g+ e   +v+v
  MELO3C018249P1 455 MKKFNTSGSYTLKIPHQFSSAHFPN--SRTEIVLRGPNGGCWIVNSVPdSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCEL--FVHV 543
                     5455556667799*********744..5679***************6545555559999**********************995443..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2112111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2215111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.50816109IPR003340B3 DNA binding domain
SMARTSM010191.2E-1218109IPR003340B3 DNA binding domain
PfamPF023621.3E-1323108IPR003340B3 DNA binding domain
CDDcd100172.77E-1823107No hitNo description
Gene3DG3DSA:2.40.330.101.6E-22210313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23212314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-18217313No hitNo description
PROSITE profilePS5086313.239219315IPR003340B3 DNA binding domain
SMARTSM010199.3E-13219315IPR003340B3 DNA binding domain
PfamPF023625.2E-12231313IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-22446545IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23447545IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-19449543No hitNo description
PROSITE profilePS5086313.338451547IPR003340B3 DNA binding domain
PfamPF023628.0E-13451543IPR003340B3 DNA binding domain
SMARTSM010191.0E-13451547IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSDTESRREM VAARRPSFYT FYSSTLCSER LKVPLKFVKH LEEIIGRSVV LIGPSGQTWL  60
VNLIQENDNL FFCEGWPTFA RDHALECGDF LVFRYDSELN FNVRVFDQSA CEKEGAFHSQ  120
CRQDKTGHKR DREEDHSSRE TCEEDVTKKT RTISDVNSDC SRENLPSIRA VEDHKSVAGQ  180
NGISKVVDIT THDKIPALPL SFQDEKKVSQ SFSSDFPYFV RIMKSFNIRG SYTLNIPYKF  240
SMAHLPSCKL KLVLHNLKGE SWTVNSVPTT RVHTSHTLCG GWMAFVRGND INMGDICVFE  300
LVRDCELRVH IFRVGKEISE DQSGNGSFNR LGAGHAVIPR KALKGLPKKM NGNSHKVHSK  360
RSKRIEVLDK KCLKSWQEPF CNDAKKHSSA KKVSTKVMVC SPSKKPSKRL VNRRTSVKGD  420
LILPARPGLR AMLARDEERA AKSFVSCFPS FVRIMKKFNT SGSYTLKIPH QFSSAHFPNS  480
RTEIVLRGPN GGCWIVNSVP DSMGRMMHTF CGGWMSFVRD NGIQMGDICI FELVGKCELF  540
VHVTGAGKKG FESSEATTCS ELAIVPTTSN HPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901608.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1S4E0510.0A0A1S4E051_CUCME; B3 domain-containing protein Os01g0723500-like
STRINGXP_008454672.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein