PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018709P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 338aa    MW: 36912 Da    PI: 7.6166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018709P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29e-0684104526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f+r G C +Gd C FaHg
  MELO3C018709P1  84 MCPEFRR-GGCGRGDGCEFAHG 104
                     6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.89E-578108IPR000571Zinc finger, CCCH-type
SMARTSM003560.05479105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.58280106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-583106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4111142IPR000571Zinc finger, CCCH-type
SMARTSM003561.6114137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484114138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCSDSPRFSF AVESLLQKFL PFNGEDKSEE DGDPYSSDHF RMYEFKVRRC TRSRSHDWTD  60
CPFAHPGEKA RRRDPRRFHY SGTMCPEFRR GGCGRGDGCE FAHGVFECWL HPARYRTEAC  120
KDGKNCKRKV CFFAHSPREL RLLPPVSNYQ SGSCSSPNNK RSSSSLRSAS TASASNHCCL  180
FCHCGGAAAT SSPTSTLFGM SHLSPPHSPP HSPGKPINGF SPISRYNPDQ SKLNGVLSYK  240
DALTELMSSI ESMNMDDANA TLAAAAAAAT AAASGPRQTI PWIDVSSLNN EDQLQFVLSP  300
STPNVSTASV NFSVDQNNNG WASASDPDLG WVNDLLM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455280.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-87C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1S3C0P50.0A0A1S3C0P5_CUCME; zinc finger CCCH domain-containing protein 2-like
STRINGXP_008455280.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-74C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]