PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018803P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 436aa    MW: 49500.7 Da    PI: 7.323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018803P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++ ++C+FaHg
  MELO3C018803P2  8 FKTKLCVLYQK-GHCSR-PSCSFAHG 31
                    69*********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-9637IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192733IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MMVGRKLFKT KLCVLYQKGH CSRPSCSFAH GNAELRRFAA ASIGRTEYRG NDLRHKLDSR  60
HSPQQERDSR GRHVPQYSSS WSLERHSDRK RRKKEHGDAC RDYSGNLRIS DRNEEHDRQG  120
KISSVSRDTL EGQLNKMQTD IEMAEQRKHQ AEVYLDEKIQ EVDSLASRVQ ELESQLYNER  180
QECRRIKSKI KKFVKAHNRH SRLQDELNRS QVRLQQLGDQ LGSDVNKIGA NEEDSSINIV  240
SDGDEPGYHA SDPFHGLQRD TSASKRKMHA VQDIAENSKR ADLNKGNKEA VGRLRRNSRW  300
NAHPAKSTYS KIEMVGNEIN DLIPTANESR QRRGRTSSSV SSADKVRGLD SGVAVPLTSM  360
AGHAVDEEVD IDLEINHEEK EPRESSMEAA SGSLPFLPPP PPPPIREFSH SKYEGEDQNV  420
DVEVVDDEKE YMDDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894RKRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-116LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-116LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455412.10.0PREDICTED: zinc finger CCCH domain-containing protein 40 isoform X2
TrEMBLA0A1S3C1010.0A0A1S3C101_CUCME; zinc finger CCCH domain-containing protein 40 isoform X2
STRINGXP_008455411.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-52C3H family protein