PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019065P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 243aa    MW: 27361.1 Da    PI: 6.9127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019065P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-1475126155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs ++ Lr llP++   ++ Kls  ++  +   YI +Lq
  MELO3C019065P1  75 KKLSHNASERDRRKKINSLYSSLRALLPSS---DQMKLSNPATISRILSYIPELQ 126
                     6789*************************9...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.87874125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-1175130No hitNo description
Gene3DG3DSA:4.10.280.107.3E-1475140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1175126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1575143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-980131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLAVSSPLFS PHQWQLEDPI SLHHQHNSLF SPFEPSDHSF YLQFPPPPLD PSHDHYPSSA  60
APSPEAVSNV SKMAKKLSHN ASERDRRKKI NSLYSSLRAL LPSSDQMKLS NPATISRILS  120
YIPELQQQVE GQMRKKEELM AAMVGQEVKN DEEKKMKSAA SSSSSIISAS RLSRHEMAIQ  180
ISTDINGCQR NYLSEILCCL EEEGLLLLNA SSFESFDGKV FHNLHLQVIF IVYNYISILF  240
FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133156RKKEELMAAMVGQEVKNDEEKKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818780.0LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455703.11e-141PREDICTED: transcription factor bHLH100-like
TrEMBLA0A1S3C2721e-140A0A1S3C272_CUCME; transcription factor bHLH100-like
STRINGXP_008455703.11e-141(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-26bHLH family protein