PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019330P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 438aa    MW: 48657.1 Da    PI: 9.1824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019330P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-065375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cgk F r  nL+ H r H
  MELO3C019330P1 53 FVCEICGKGFQRDQNLQLHRRGH 75
                    89*******************88 PP
2zf-C2H213.60.0002129151123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  MELO3C019330P1 129 WKCEKCSKRYAVQSDWKAHSKTC 151
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-65275No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0125375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6145375IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-6124149No hitNo description
SMARTSM00355130129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MADHELSDCF LQIPLTGSNP SLLKKKRNLP GTPDPEAEVI ALSPKTLLAT NRFVCEICGK  60
GFQRDQNLQL HRRGHNLPWK LKQRSNKEAK KRVYVCPEKS CVHHHPSRAL GDLTGIKKHF  120
CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTLFSRRDSF ITHRAFCDAL  180
AEETARVKAG TTISNLNNNL MGGWRDHEET AGVFMTQHFG STMKPVTMKM SSNSFQMIGG  240
MMMNNSGGGV YGEDSVWGNQ VQMGNYYYNE NQGLMVNGGG VGVCSLYSHE FQQVNETQRG  300
NMSATALLQK AAEIGATSSS PSNTVTRSAA PSLSLLQIQQ QGFLFNNGSE FCNTNNNPIV  360
VVENNGSEMY TAKRRRSQSE FECGSGNART GTGTGTGETR DFLGKLVPKL YVTPQHQSTD  420
GFRCQIFMSF YILIYIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36125199371Zinc finger protein JACKDAW
5b3h_F4e-36125199371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819160.0LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455947.20.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-121IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1S3C2S80.0A0A1S3C2S8_CUCME; zinc finger protein MAGPIE-like
STRINGXP_008455947.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-120C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]