PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019390P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 362aa    MW: 39692.4 Da    PI: 7.2529
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019390P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.57e-0615532755
                    HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox 27 aeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +e    LA+k            ++ +qV +WFqNrR+  
  MELO3C019390P2 15 REVLVALADKFsesverkgkiAVQMKQVWNWFQNRRYAI 53
                    5555555555555555555558899***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.361156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-4659IPR009057Homeodomain-like
SuperFamilySSF466891.15E-7956IPR009057Homeodomain-like
PfamPF167197.2E-41105230IPR032001SAWADEE domain
CDDcd000240.00707117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
METILQGHNN TMPAREVLVA LADKFSESVE RKGKIAVQMK QVWNWFQNRR YAIRAKTSKA  60
PGKLAVSPVV QIESTPVRNV PQTVVVPAPT PVGTAKSAPE NPLSEFEAKS GRDGAWYDVA  120
TFLSHRSVES GDPEVLVRFS GFGSEEDEWV NIRRNIRPRS LPCESSECVA VLPGDLILCF  180
QEGKEQALYF DAHVLDTQRR RHDVRGCRCR FLVRYDHDQS EEIVQLRKIC RRPETDYRLQ  240
QLHAVNEAAS IEPSKSGMDS VLLSGQRINF ETPQNPLSKD AALVIPNANP HINAHAQTST  300
QEARNTETNT APITFSSGNH NAPTTFNSAN LAGSSAFSSG IVTNTVSGGS ADNVSDGKLL  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461062346134SHH1 SAWADEE
4iur_B2e-461062346134SHH1 SAWADEE
4iut_A2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461062346134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456011.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-123SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S3C2X60.0A0A1S3C2X6_CUCME; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
STRINGXP_008456010.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-107sequence-specific DNA binding transcription factors;sequence-specific DNA binding