PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019494P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 259aa    MW: 27851 Da    PI: 9.279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019494P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-302281159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  MELO3C019494P1 22 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 81
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-33783IPR003657WRKY domain
SuperFamilySSF1182903.27E-281583IPR003657WRKY domain
PROSITE profilePS5081129.1611783IPR003657WRKY domain
SMARTSM007743.2E-372282IPR003657WRKY domain
PfamPF031061.4E-272381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPPQNRKAR VSVRARCESA TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV  60
QRCLEDMSIL ITTYEGTHNH PLPVGATAMA STASAASASF MLLDSSNNNN TNLSNSLHQN  120
PNILNSSSPS FLQTQNPNNH LFTPLFPTSS TSHFPHSFYH SNFQPNHLVS PLDRRTWKPV  180
DDNKPPPLTP DAVSAIASDP KFRVAVAAAI SSLINKENEH VTTTGETATD GKGGGGSDSD  240
SGSKKWVVES LSSKSNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-231283777Probable WRKY transcription factor 4
2lex_A8e-231283777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840190.0GU984019.1 Cucumis sativus WRKY protein (WRKY19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456102.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F07e-67WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S3C2F50.0A0A1S3C2F5_CUCME; probable WRKY transcription factor 9
STRINGXP_008456102.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-56WRKY DNA-binding protein 9