PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019730P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 434aa    MW: 47401.8 Da    PI: 6.9289
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019730P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.6e-134772126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C+yG++C+F+H+
  MELO3C019730P1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
                    5789*********************9 PP
2zf-CCCH36.11.1e-1191115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  MELO3C019730P1  91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
                     789********************96 PP
3zf-CCCH37.24.9e-12138160527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G +CkF+H++
  MELO3C019730P1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
                     6********************97 PP
4zf-CCCH39.87.6e-13278303227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ +GtCkyG+ CkF+H++
  MELO3C019730P1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303
                     689*********************96 PP
5zf-CCCH34.73e-11320345126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++  +G CkyG++CkF H+
  MELO3C019730P1 320 PGQAICSYYNMYGLCKYGPSCKFDHP 345
                     5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3054674IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-64673IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-104872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-65173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-55271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.91588116IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-494115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4135160IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5138159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558276304IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6276303IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5282302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112319347IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6319346IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8321345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4324344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPDNLQVQRH DVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVGQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNSLPQ ARPGALGSGG  180
TPFMPSSGVP YTGGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPSQGAIA AQDWNTYVSN  240
VNPILPNLGY NSINLEDSYS NGQLALSTST PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNALGLPSRP GQAICSYYNM YGLCKYGPSC KFDHPSPTYP YNYGFTLPLL  360
DSSFIKYPSN NFTMSSHETL PGMLSKSSEW VQKADPSNKR RTTDSKVIVD STGEEATSVS  420
CSLPGGSESL QDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456401.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A1S3C3U60.0A0A1S3C3U6_CUCME; zinc finger CCCH domain-containing protein 3-like
STRINGXP_008456401.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-108C3H family protein