PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C019995P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 223aa MW: 23851.1 Da PI: 9.0138

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019995P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.7	1.3e-40	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lq+ql++l+++l+ MELO3C019995P1 32 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLN 126 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ MELO3C019995P1 127 AITTQ 131 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.331	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-41	32	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGRRNNNSNN LILSSSSSSQ SSGISNLNTI TPCAACKLLR RRCAQECPFS PYFSPHEPHK 60 FASVHKVFGA SNVAKMLMEV PENQRADAAN SLVYEANLRL RDPVYGCMGA ISALQHQLHT 120 LQSDLNAITT QIFKYKFTHH PINIPSSPNF ISPSPAATPP AAPPTPPHSQ PPPLSLPPPL 180 PPSSSSSSVF SPPIITTATS TTVVELINPI VSTSTQHISY FG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	32	135	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	32	135	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	0.0	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456762.1	1e-159	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	3e-65	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1S3C3L1	1e-157	A0A1S3C3L1_CUCME; LOB domain-containing protein 15-like
STRING	XP_008456762.1	1e-158	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	6e-64	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]