PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020162P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 183aa    MW: 19977.8 Da    PI: 8.9092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020162P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.43.8e-10157177222
                     --SS-EEEEEEE--TT-SS-E CS
            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                     dDg++WrKYGqKe+ gs+fpr
  MELO3C020162P1 157 DDGFTWRKYGQKEILGSRFPR 177
                     8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-8152177IPR003657WRKY domain
SuperFamilySSF1182901.44E-7153177IPR003657WRKY domain
PfamPF031061.4E-6157177IPR003657WRKY domain
PROSITE profilePS508119.328157177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEEAISLILR GCSLARQLEF NVLNLGNNNI NMSDQSHFMA RSCDEILGVF SAAKDRLSSH  60
EPPPLTAVQG EVGLEEWLKS TCSQAMELAQ MQTRSPSPPS AIVTVPAAVK DSGKLMAMGF  120
SSSSSSSTKA RRRKDDMEKR TVRVGAPRIG NTELPPDDGF TWRKYGQKEI LGSRFPRLST  180
VF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456967.11e-127PREDICTED: WRKY transcription factor 55
TrEMBLA0A1S3C4H91e-126A0A1S3C4H9_CUCME; WRKY transcription factor 55
STRINGXP_008456967.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-23WRKY DNA-binding protein 55