PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020189P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 198aa    MW: 22707.7 Da    PI: 8.9397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020189P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-10138185455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L+ ++P +    +k +  a++L ++++Y+ sLq
  MELO3C020189P1 138 SHSLAERVRREKINHKLKCLQNIIPGC----HKSMGMAMVLDETINYVYSLQ 185
                     8*************************9....788**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-8132189No hitNo description
SuperFamilySSF474591.09E-15132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-8140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MREFRQNLQH FKSSKASEEM TFNMEVINQF SNATESVLED FNETESSVEN FWGYHFQLPE  60
NTSPSSLSNF SSVALLKCQK DFPVITRSSL LVDSAQETMK RKEKQNLGGG RKRRNCEKEQ  120
EKPGVVHVRA KRGQATDSHS LAERVRREKI NHKLKCLQNI IPGCHKSMGM AMVLDETINY  180
VYSLQNQVEV RNMINFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199113KRKEKQNLGGGRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818541e-176LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132601e-176LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456998.11e-127PREDICTED: transcription factor BEE 3-like isoform X2
TrEMBLA0A1S3C5R81e-125A0A1S3C5R8_CUCME; transcription factor BEE 3-like isoform X2
STRINGXP_008456994.11e-106(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-34bHLH family protein