PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C020703P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 160aa MW: 17680.2 Da PI: 8.3908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C020703P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H MELO3C020703P1 49 FVCKTCNREFSSFQALGGHRASH 71 89**********99999998887 PP
2	zf-C2H2	14.3	0.00012	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+Cg +F+ L H+r+H MELO3C020703P1 89 HDCPICGLHFPMGQALGGHMRRH 111 56********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.84E-9	47	111	No hit	No description
Pfam	PF13912	3.8E-12	48	73	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.328	49	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.24	49	71	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.9E-10	89	112	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.663	89	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MFPLELDPNF MKREREGEFE ALDMVDCLSK VEEPWRKNTA PAADSGKVFV CKTCNREFSS 60 FQALGGHRAS HKKPNFKDAN GPPTKPKAHD CPICGLHFPM GQALGGHMRR HRTSTTTAAA 120 VLEKSDGGEK RGFGLDLNLT PIENNLKLQL STPFVNCFY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681926	0.0	LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457541.1	1e-117	PREDICTED: zinc finger protein ZAT12-like
TrEMBL	A0A1S3C722	1e-115	A0A1S3C722_CUCME; zinc finger protein ZAT12-like
STRING	XP_008457541.1	1e-116	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-34	C2H2 family protein