PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020921P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 353aa    MW: 41038.2 Da    PI: 10.3821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020921P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-1612104199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv ++   l+++ l lp+kf++++gg+     ++tl  ++g  W+++l  +k++g++++++GW eFv+   ++ g f+vF+l+g  +f  +v 
  MELO3C020921P1  12 FFKVILHQT-LTQQKLELPNKFVKNNGGSM-LFNKVTLFLPDGANWKIQL--KKSDGKIFFRRGWPEFVQFYSVQPGYFLVFQLKGICCF--NVL 100
                     667665544.55556********9998885.5569***************..********************************999999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  MELO3C020921P1 101 IFDT 104
                     9987 PP
2B364.12.2e-20251347197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f  ++ ps+  + + l+lp++f e++  k  es++++le  +grsW+v +  ++  +++r+ l++GWk+F+ +n+LkegD++vF+l+++ +   +
  MELO3C020921P1 251 FMVTMRPSYIQTGNYLSLPRRFGERYI-K--ESVDVKLEVGDGRSWRVWCgvRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMEKnDAVLF 342
                     778999*******************94.3..5899*************98667778888899***********************9976455555 PP

                     EEEEE CS
              B3  93 vvkvf 97 
                     +v +f
  MELO3C020921P1 343 KVAIF 347
                     66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-215105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-205105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-1810103No hitNo description
PROSITE profilePS5086312.54811105IPR003340B3 DNA binding domain
SMARTSM010191.1E-1512105IPR003340B3 DNA binding domain
PfamPF023621.2E-1312104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-24244348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-22246347IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-24249348No hitNo description
SMARTSM010197.0E-14251350IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212251350IPR003340B3 DNA binding domain
PfamPF023621.2E-18251344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MANLFSSPNP HFFKVILHQT LTQQKLELPN KFVKNNGGSM LFNKVTLFLP DGANWKIQLK  60
KSDGKIFFRR GWPEFVQFYS VQPGYFLVFQ LKGICCFNVL IFDTSATEID YPIRGLLDII  120
PKSRNEDEEE SIQILNEMVL KKRRMEKEEE TPAYRSLRGL KKMMRKNAKV KIAKNRGITS  180
DEDEEDLETD NSRRQSNHRG TAYNEGDDGR VSPESMRPMN PRKTPPALTE NQLAVKKRAS  240
RFKSRRNNPS FMVTMRPSYI QTGNYLSLPR RFGERYIKES VDVKLEVGDG RSWRVWCGVR  300
WAFTRRRTEL KGGWKRFAVD NELKEGDICV FELMEKNDAV LFKVAIFRLP NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1424734945142B3 domain-containing transcription factor VRN1
4i1k_B6e-1424734945142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457957.20.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3C6V00.0A0A1S3C6V0_CUCME; B3 domain-containing transcription factor VRN1-like
STRINGXP_008457957.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-40B3 family protein