PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020923P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 207aa    MW: 23840.4 Da    PI: 9.9566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020923P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.9e-1524122199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     ffkv  ++ +lk++ l +p+kf++e+g k   + ++ l+   +gr+W+v+l+ ++ + r+++  +GW+ Fv+   +    f+vFk++++ s+f  
  MELO3C020923P1  24 FFKVV-SARALKEQKLEIPRKFVREYGVKAFATNQICLKVaADGRKWNVRLTKTNDGTRVWFHdDGWQMFVEFYSVGLEYFLVFKYERQsSSF-- 115
                     67766.677788888***********87777888899999899********99888888666559*********************9876777.. PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     +v +f++
  MELO3C020923P1 116 YVVIFDR 122
                     9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-1719130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-1919123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-1822121No hitNo description
PROSITE profilePS5086311.67423123IPR003340B3 DNA binding domain
SMARTSM010192.0E-1024123IPR003340B3 DNA binding domain
PfamPF023621.8E-1224122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGSSSRPKND VVKQPCKASD NPHFFKVVSA RALKEQKLEI PRKFVREYGV KAFATNQICL  60
KVAADGRKWN VRLTKTNDGT RVWFHDDGWQ MFVEFYSVGL EYFLVFKYER QSSSFYVVIF  120
DRTATEIEYP MKIIICIDDA EEKVKKETNI SQELMDNKKK LRSTTTSQRE KAMANATAFQ  180
SMTINPSFLC KMSPSHIHRS LVSQIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902162.11e-150PREDICTED: B3 domain-containing protein At3g18960-like
TrEMBLA0A1S4E1R11e-148A0A1S4E1R1_CUCME; B3 domain-containing protein At3g18960-like
STRINGXP_008457960.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.17e-18B3 family protein