PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021031P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 306aa    MW: 35616.6 Da    PI: 5.2541
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021031P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.3e-1928117286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt+qe+l+Li a+++++ +l+r++lk ++Weev+  +      ++   +++++qC++k+e+l++r + +k++ + +t +sss++ yfd ++
  MELO3C021031P1  28 WTHQETLHLIYAYQDKWYSLERDQLKSNQWEEVAVTVaarcgySHFDPSKTSVQCRHKMEKLRQRLRSEKHRLSTGT-QSSSHWLYFDLMN 117
                     **********************************9998655544445589*************************95.6677******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1212790IPR017877Myb-like domain
PfamPF138376.6E-1627118No hitNo description
SMARTSM005950.002835124IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSPRPSPLA SLSSSKSIST QKPHPIPWTH QETLHLIYAY QDKWYSLERD QLKSNQWEEV  60
AVTVAARCGY SHFDPSKTSV QCRHKMEKLR QRLRSEKHRL STGTQSSSHW LYFDLMNNLL  120
RGPLPISARP MSSIPFDNHQ DDHITEKSDN YNSDYEEEER NNRSKSKSIS NILRRSIVAR  180
RTRNSSENEE EEEEEEEEED NEDEGEEEER DIRVSRFPEE YAGAEEEEGK EMCSKLAAEI  240
RLFADRLVGM ENWKMDMMKE AEMNRIAIEN KRMEMILESE KKIVNSIAKA FGCLPSKRLK  300
IGHDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818020.0LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458014.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A1S3C6D60.0A0A1S3C6D6_CUCME; trihelix transcription factor ASIL1
STRINGXP_008458014.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.19e-26Trihelix family protein