PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021131P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 255aa    MW: 29398.1 Da    PI: 6.3119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021131P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50101371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL kk+ +++     ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ v++ 
  MELO3C021131P1  10 LPPGFRFYPSDEELVCHYLYKKIGNEEALR-GTLVEIDLHTCEPWQLPEVAKLNGNEWYFFSFRDRKYSTGFRTNRATTAGYWKATGKDRMVMDP 103
                     79**********************999555.78***************8888899***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+e vg++ktLvfy++rap+g kt W+mhe+r+
  MELO3C021131P1 104 tKKEIVGMRKTLVFYRNRAPNGIKTGWIMHEFRI 137
                     77788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-618156IPR003441NAC domain
PROSITE profilePS5100557.31610156IPR003441NAC domain
PfamPF023651.8E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIGNEEALRG TLVEIDLHTC EPWQLPEVAK  60
LNGNEWYFFS FRDRKYSTGF RTNRATTAGY WKATGKDRMV MDPTKKEIVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRIETP HMPPKEDWVL CRVFHKTKSD QDTTETTTTK HTTSHFTFDA  180
MMAESSSYYL LPNNVEFLPS YNSNGLLPLD INLEETSFNG SSYGVGDSNS EEMKYEIIDN  240
NIHNNAFPFN YFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48916116170NO APICAL MERISTEM PROTEIN
1ut4_B5e-48916116170NO APICAL MERISTEM PROTEIN
1ut7_A5e-48916116170NO APICAL MERISTEM PROTEIN
1ut7_B5e-48916116170NO APICAL MERISTEM PROTEIN
3swm_A5e-48916119173NAC domain-containing protein 19
3swm_B5e-48916119173NAC domain-containing protein 19
3swm_C5e-48916119173NAC domain-containing protein 19
3swm_D5e-48916119173NAC domain-containing protein 19
3swp_A5e-48916119173NAC domain-containing protein 19
3swp_B5e-48916119173NAC domain-containing protein 19
3swp_C5e-48916119173NAC domain-containing protein 19
3swp_D5e-48916119173NAC domain-containing protein 19
4dul_A5e-48916116170NAC domain-containing protein 19
4dul_B5e-48916116170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818020.0LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458103.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-63NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3C7P30.0A0A1S3C7P3_CUCME; NAC domain-containing protein 21/22-like
STRINGXP_008458103.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-90NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]