PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021288P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 121aa    MW: 13019.8 Da    PI: 10.7525
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021288P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-191044135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  MELO3C021288P1 10 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 44
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-13462IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.545440IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-13643No hitNo description
Gene3DG3DSA:3.30.50.108.2E-16844IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-12944No hitNo description
PfamPF003203.1E-171044IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401035IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MESEQNKKTC ADCGTTKTPL WRGGPAGPKS LCNACGIRSR KKRRSLLGLN RGGEVERKNK  60
GSSNNRNNNG GGNQGKIGGE SLKWRSMAFG RKELMQRTQL GEEEQAAVLL MALSYGSVYA  120
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819241e-154LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132651e-154LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458384.16e-82PREDICTED: GATA transcription factor 16-like isoform X1
SwissprotQ8LG103e-37GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1S3C8C21e-80A0A1S3C8C2_CUCME; GATA transcription factor 16-like isoform X1
STRINGXP_008458384.12e-81(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-28GATA transcription factor 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]