PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C021789P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 171aa MW: 18491 Da PI: 8.2284

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C021789P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.1	2e-45	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q++ l+++la MELO3C021789P1 15 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLA 109 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e MELO3C021789P1 110 LAQAE 114 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.455	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-45	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKTENGRKQG GGAAPCAACK LLRRRCGEEC VFAPYFPADQ PHKFANVHKV FGASNVNKML 60 QELPIHQRGD AVSSLVYEAN ARVRDPVYGC VGAISSLQHQ IDALQTQLAL AQAEVVHLRV 120 RQTASFSNYG LSPTSPSNSG SPSSRLVGSH SRAMFEMDMV VDQAIEDSMW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	11	116	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	11	116	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681931	0.0	LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008459081.1	1e-126	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	9e-71	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S3CAK2	1e-124	A0A1S3CAK2_CUCME; LOB domain-containing protein 4
STRING	XP_008459081.1	1e-125	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-68	LOB domain-containing protein 4