PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021930P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 418aa    MW: 47841.4 Da    PI: 6.6992
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021930P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-1636119695
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + ++ l+ + l +p+kfa+++gg+      +tl  ++g +W ++l  +++++++++++GW eFv+ + +++g  +vF+++g+s f+  + 
  MELO3C021930P1  36 VVPSILQDKKLKIPNKFAKKFGGD--LLDLVTLVAPNGYRWVLEL--KRHGRSMWFEDGWHEFVEHHCIQVGQLLVFRFEGNSVFN--FY 119
                     3455566677***********999..6669***************..*********************************999994..44 PP
2B362.66.3e-20320409598
                     -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +s+  +   l +p kfae++ +g+  +  ++tl+ +sg++W+v++   + + ++ lt+GW +Fv +n+Lke D++vF+l++ ++  l v+vfr
  MELO3C021930P1 320 MRQSYIRRGFHLHIPSKFAEKYlKGV-WG--DITLQVSSGKQWRVRC--IREGPGTKLTRGWADFVVDNELKEEDVCVFELINMKDIVLQVTVFR 409
                     66788888889***********7666.34..7***************..67777789************************98899999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2130122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-1631122No hitNo description
PROSITE profilePS5086314.02931124IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-2031122IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-1332124IPR003340B3 DNA binding domain
PfamPF023623.1E-1337118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-23309411IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-25309410IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-22314409No hitNo description
SMARTSM010193.4E-15316411IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408316411IPR003340B3 DNA binding domain
PfamPF023621.0E-18319409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MENSLTAMPE SNDQEGAQSF SESSPARRAG LFYKLVVPSI LQDKKLKIPN KFAKKFGGDL  60
LDLVTLVAPN GYRWVLELKR HGRSMWFEDG WHEFVEHHCI QVGQLLVFRF EGNSVFNFYM  120
FNLTAIPNGP CNTSNASIEQ NDGEPCPDTL GKEAEYKKLV EILGTGSPDP SPRPSVKNVL  180
CEFPDQQKFN GSCNGTSIKN FMHWFDTENL HPLKDFDNPL KHLDKLRLQL LNSNRDIGIQ  240
FDGDEHAKAR ENHDFQLNQS SDEREEGAMK KKLKLEPIDY YNDNEPIDEK KCGNIPHKIN  300
RMAFGVEEFK VGNPFCWIVM RQSYIRRGFH LHIPSKFAEK YLKGVWGDIT LQVSSGKQWR  360
VRCIREGPGT KLTRGWADFV VDNELKEEDV CVFELINMKD IVLQVTVFRV HGDPTKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-2630541138143B3 domain-containing transcription factor VRN1
4i1k_B1e-2630541138143B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819140.0LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459236.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3C9Q50.0A0A1S3C9Q5_CUCME; B3 domain-containing transcription factor VRN1-like
STRINGXP_008459236.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-28related to vernalization1 1