PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022047P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 216aa    MW: 25055.5 Da    PI: 6.3719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022047P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-191158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++vk +G g+W+++a+  g++Rt+k+c++rw +yl
   MELO3C022047P1 11 KGPWTVEEDKLLCEYVKVHGEGRWSSVAKGSGLNRTGKSCRLRWVNYL 58
                     79********************************************97 PP
2Myb_DNA-binding513.2e-1664108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIa++++ gRt++++k++w+++
   MELO3C022047P1  64 RGHLTPQEEGIIIELHALWGNK-WSTIAKYLP-GRTDNEIKNYWRTH 108
                      6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.51662IPR017930Myb domain
SuperFamilySSF466891.07E-319105IPR009057Homeodomain-like
SMARTSM007175.0E-171060IPR001005SANT/Myb domain
PfamPF002497.2E-181158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231265IPR009057Homeodomain-like
CDDcd001671.10E-111358No hitNo description
PROSITE profilePS5129419.77663113IPR017930Myb domain
SMARTSM007176.2E-1463111IPR001005SANT/Myb domain
PfamPF002491.2E-1464108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2466111IPR009057Homeodomain-like
CDDcd001671.23E-968109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDGKEEQEWR KGPWTVEEDK LLCEYVKVHG EGRWSSVAKG SGLNRTGKSC RLRWVNYLKP  60
GLKRGHLTPQ EEGIIIELHA LWGNKWSTIA KYLPGRTDNE IKNYWRTHFK KMKPKPRRKS  120
QIIVPKTDNK TLPPISRCEE RVMELMKPYD SDDLGMVFTD PTAMEDHEQT YYLSKVYQDL  180
TNWTVESGAV AAVVAEQEEE SLWDGLWEVP ENDIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26111117106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459705.11e-159PREDICTED: transcription factor MYB59-like
SwissprotQ4JL842e-50MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A1S3CAT11e-158A0A1S3CAT1_CUCME; transcription factor MYB59-like
STRINGXP_008459705.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-64myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]