PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022181P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 183aa    MW: 20489.9 Da    PI: 5.0361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022181P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-18959155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+  ++g
  MELO3C022181P1  9 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAAYHFRG 59
                    67*****999.**********8...557**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-23968IPR016177DNA-binding domain
PfamPF008479.2E-12959IPR001471AP2/ERF domain
CDDcd000188.23E-33969No hitNo description
PROSITE profilePS5103224.0261067IPR001471AP2/ERF domain
SMARTSM003801.2E-391073IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-321068IPR001471AP2/ERF domain
PRINTSPR003673.8E-101122IPR001471AP2/ERF domain
PRINTSPR003673.8E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRSHGAATSS YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ETPEMAATAY DVAAYHFRGR  60
DARLNFPHLV NSLPFPLSST PDDIRLAAHE AALRVRTTPA VASSELGDET STLGLAPVTV  120
RLSPSQIQAI NESTLDSPNM WMQMSSESML MDQEFSNGNV FVDDMQDDEM WENMHNDSLW  180
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18672168ATERF1
3gcc_A1e-18672168ATERF1
5wx9_A2e-18271676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459604.11e-133PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-64ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S3CB311e-132A0A1S3CB31_CUCME; ethylene-responsive transcription factor ERF021
STRINGXP_008459604.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-67ERF family protein